SMTL ID : 6mxr.1

Crystal structure of the dimeric bH1-Fab variant [HC-Y33W,HC-D98M,HC-G99M]

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

hetero-2-2-mer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: W.99, Y.105, M.107 Chain B: Q.93, H.95 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain C: W.99, M.107 Chain D: Q.93, H.95 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 1 residues within 4Å: Chain B: S.207 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.207 Water bridges: B:S.207

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain D: Q.41, K.43, P.63, R.65, F.66, E.85, D.86 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:Q.41, D:K.43, D:R.65, D:E.85, D:D.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schrag, J.D. et al., Binding symmetry and surface flexibility mediate antibody self-association. Mabs (2019)

Release Date

2019-07-31

Peptides

anti-VEGF-A Fab fragment bH1 heavy chain: AC
anti-VEGF-A Fab fragment bH1 light chain: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

C
A

B
L

D
B

anti-VEGF-A Fab fragment bH1 heavy chain

anti-VEGF-A Fab fragment bH1 light chain

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