SMTL ID : 6mxv.1

The crystal structure of a rhodanese-like family protein from Francisella tularensis subsp. tularensis SCHU S4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

homo-dimer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: Q.30, N.33, E.34, P.57, W.117, P.123 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.30, A:N.33 EDO.5: 6 residues within 4Å: Chain B: Q.30, N.33, E.34, P.57, W.117, P.123 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.30, B:N.33

3 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: E.222, H.226 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.222, H2O.1, H2O.4, H2O.6, H2O.10 MG.6: 2 residues within 4Å: Chain B: H.180, N.252 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.180, B:N.252, H2O.8, H2O.11, H2O.12 MG.7: 3 residues within 4Å: Chain B: N.141, E.222, H.226 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.222, H2O.3, H2O.7, H2O.10

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 10 residues within 4Å: Chain A: I.60, H.61, L.62, A.74, V.75 Chain B: I.60, H.61, L.62, A.74, V.75 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Water bridges: B:H.61 Hydrogen bonds: A:H.61

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 7 residues within 4Å: Chain A: D.44, V.51, Y.55, A.59, I.60, H.61 Chain B: S.73 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.44, B:S.73 Water bridges: A:H.61 PEG.8: 5 residues within 4Å: Chain B: V.51, Y.55, A.59, I.60, H.61 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.55

1 x 12P: DODECAETHYLENE GLYCOL(Non-covalent)

12P.9: 9 residues within 4Å: Chain B: Q.22, C.24, M.32, D.39, Y.83, K.105, N.106, V.107, I.108 1 PLIP interactions: 1 interactions with chain B Water bridges: B:Q.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of a rhodanese-like family protein from Francisella tularensis subsp. tularensis SCHU S4. To Be Published

Release Date

2018-11-21

Peptides

Rhodanese-like family protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Rhodanese-like family protein