SMTL ID : 6my5.1

Crystal structure of the dimeric bH1-Fab variant [HC-Y33W,HC-D98F,HC-G99M,LC-S30bR]

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

hetero-2-2-mer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: E.155, P.156, V.157, P.174, A.175, L.185 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:V.157, A:V.157, A:A.175 Water bridges: A:E.155, A:E.155, A:A.175 EDO.2: 7 residues within 4Å: Chain B: P.123, Y.190, F.213, N.214, R.215, G.216, E.217 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.190, B:Y.190, B:G.216, B:E.217 EDO.3: 3 residues within 4Å: Chain B: E.109, R.146, E.147 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.12, B:S.12, B:E.147 Water bridges: B:R.146 EDO.4: 7 residues within 4Å: Chain C: Y.152, E.155, P.156, V.157, P.174, A.175, L.185 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:Y.152, C:V.157, C:V.157, C:A.175 Water bridges: C:E.155, C:A.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schrag, J.D. et al., Binding symmetry and surface flexibility mediate antibody self-association. Mabs (2019)

Release Date

2019-07-31

Peptides

anti-VEGF-A Fab fragment bH1 heavy chain: AC
anti-VEGF-A Fab fragment bH1 light chain: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

C
A

B
L

D
B

anti-VEGF-A Fab fragment bH1 heavy chain

anti-VEGF-A Fab fragment bH1 light chain

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