SMTL ID : 6myn.1 (1 other biounit)

Crystal structure of murine NF-kappaB inducing kinase (NIK) bound to inhibitor R7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.74 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.309, K.310, E.311, H.314 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.310, A:E.311 Salt bridges: A:R.309, A:H.314 SO4.2: 2 residues within 4Å: Chain A: R.322, R.323 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.322, A:R.323

1 x K6Y: (5s,7s)-9-fluoro-10-[(3R)-3-hydroxy-3-(5-methyl-1,2-oxazol-3-yl)but-1-yn-1-yl]-N~3~-methyl-6,7-dihydro-5H-5,7-methanoimidazo[2,1-a][2]benzazepine-2,3-dicarboxamide(Non-covalent)

K6Y.3: 22 residues within 4Å: Chain A: R.82, G.83, E.87, V.88, A.101, K.103, E.114, C.118, I.126, V.127, I.141, M.143, E.144, L.145, L.146, G.149, S.150, D.193, L.196, C.207, D.208, F.209 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:R.82, A:V.88, A:V.88, A:I.126, A:I.141, A:L.196, A:D.208, A:F.209, A:F.209 Hydrogen bonds: A:R.82, A:E.144, A:L.146, A:L.146, A:D.208, A:F.209 Halogen bonds: A:D.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feng, J.A. et al., Structure Based Design of Potent Selective Inhibitors of Protein Kinase D1 (PKD1). Acs Med.Chem.Lett. (2019)

Release Date

2019-08-07

Peptides

Mitogen-activated protein kinase kinase kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase kinase kinase 14

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