SMTL ID : 6n0d.2 (1 other biounit)

Crystal structure of Tdp1 catalytic domain in complex with compound XZ575

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x K8J: 4-fluorobenzene-1,2-dicarboxylic acid(Non-covalent)

K8J.1: 10 residues within 4Å: Chain A: Y.57, H.116, K.118, N.136, S.252, S.312, P.314, H.346, K.348, N.369 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:P.314 Hydrogen bonds: A:N.136, A:S.252, A:N.369 Salt bridges: A:H.116, A:H.116, A:K.118, A:H.346, A:H.346, A:K.348, A:K.348 pi-Stacking: A:Y.57

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 9 residues within 4Å: Chain A: I.208, G.209, S.210, G.224, T.366, A.368, W.375, L.392, G.393 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.210, A:G.224, A:T.366

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lountos, G.T. et al., Crystal structure of Tdp1 catalytic domain in complex with compound XZ575. To Be Published

Release Date

2019-11-13

Peptides

Tyrosyl-DNA phosphodiesterase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Tyrosyl-DNA phosphodiesterase 1

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