SMTL ID : 6n0k.1

The complex of CCG-257081 bound to pirin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.46 Å

Oligo State

monomer

Ligands

1 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain A: H.67, H.69, H.112, E.114 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.67, A:H.69, A:H.112, A:E.114, H2O.1, H2O.7

1 x K8M: (3R)-N-(4-chlorophenyl)-5,5-difluoro-1-[3-fluoro-5-(pyridin-4-yl)benzene-1-carbonyl]piperidine-3-carboxamide(Non-covalent)

K8M.2: 18 residues within 4Å: Chain A: E.29, V.35, R.37, L.52, D.54, F.56, F.64, H.67, S.76, L.78, M.84, E.114, G.124, L.125, Q.126, W.128, Q.263, G.265 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.35, A:L.52, A:D.54, A:F.64, A:Q.126, A:W.128, A:W.128 Hydrogen bonds: A:Q.126 Water bridges: A:Q.126, A:Q.126 pi-Stacking: A:F.56

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: S.164, G.165, V.174, T.176, T.180 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.165, A:V.174, A:T.180 Water bridges: A:E.166, A:T.176 EDO.4: 5 residues within 4Å: Chain A: K.16, G.200, E.233, G.234, D.235 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.200, A:G.234 Water bridges: A:K.16, A:W.201, A:W.201, A:G.234 EDO.5: 4 residues within 4Å: Chain A: I.262, T.271, N.272, E.273 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.271, A:N.272, A:N.272, A:E.273 Water bridges: A:T.271 EDO.6: 6 residues within 4Å: Chain A: E.26, R.34, R.36, E.55, F.56, K.57 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.34, A:R.36, A:K.57 Water bridges: A:R.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lisabeth, E.M. et al., Identification of Pirin as a Molecular Target of the CCG-1423/CCG-203971 Series of Antifibrotic and Antimetastatic Compounds. ACS Pharmacol Transl Sci (2019)

Release Date

2019-07-10

Peptides

Pirin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Pirin

Related Entries With Identical Sequence