SMTL ID : 6n0z.1 (2 other biounits)

Crystal structure of Anaerolinea thermophila mevalonate 5-phosphate decarboxylase N20K H194M mutant complexed with (R)-MVAPP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

2 x DP6: (3R)-3-HYDROXY-5-{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}-3-METHYLPENTANOIC ACID(Non-covalent)

DP6.1: 18 residues within 4Å: Chain A: A.17, K.20, Y.21, W.22, K.24, R.30, R.75, S.110, S.142, G.143, S.144, R.147, S.194, T.195, M.198, M.244, D.284, A.285 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:W.22 Hydrogen bonds: A:Y.21, A:Y.21, A:Y.21, A:S.110, A:S.142, A:G.143, A:S.144, A:S.194, A:D.284 Water bridges: A:R.75, A:R.75, A:R.147, A:A.285 Salt bridges: A:K.24, A:R.30, A:R.75, A:R.147 DP6.2: 18 residues within 4Å: Chain B: A.17, K.20, Y.21, W.22, K.24, R.30, R.75, S.110, S.142, G.143, S.144, R.147, S.194, T.195, M.198, M.244, D.284, A.285 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:K.20 Hydrogen bonds: B:Y.21, B:R.75, B:S.110, B:S.142, B:G.143, B:S.144, B:S.194, B:D.284 Water bridges: B:R.75, B:S.144, B:S.144, B:R.147, B:T.195, B:A.285 Salt bridges: B:K.24, B:R.30, B:R.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thomas, S.T. et al., Substrate Specificity and Engineering of Mevalonate 5-Phosphate Decarboxylase. Acs Chem.Biol. (2019)

Release Date

2019-07-17

Peptides

Diphosphomevalonate decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

Diphosphomevalonate decarboxylase

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