SMTL ID : 6n16.2 (3 other biounits)

Vaccine-elicited NHP FP-targeting neutralizing antibody 0PV-b.01 in complex with HIV fusion peptide (residue 512-519)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ALA- VAL- GLY- ILE- GLY- ALA- VAL- PHE: HIV fusion peptide (512-519)(Non-covalent)

ALA-VAL-GLY-ILE-GLY-ALA-VAL-PHE.1: 23 residues within 4Å: Chain A: Y.35, Y.54, E.101, P.102, V.103, A.105, G.108, T.109, V.110, D.111 Chain B: H.31, N.33, Y.37, H.39, Y.41, L.51, Y.54, E.55, E.94, T.96, L.97, I.99, F.101 13 PLIP interactions: 8 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:L.51, B:Y.54, B:I.99, B:F.101, A:Y.35, A:Y.54, A:P.102 Hydrogen bonds: B:Y.41, B:T.96, B:T.96, B:T.96, A:P.102, A:V.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kong, R. et al., Antibody Lineages with Vaccine-Induced Antigen-Binding Hotspots Develop Broad HIV Neutralization. Cell (2019)

Release Date

2019-07-31

Peptides

antibody 0PV-b.01 Fab heavy chain: A
antibody 0PV-b.01 Fab light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

antibody 0PV-b.01 Fab heavy chain

antibody 0PV-b.01 Fab light chain

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