SMTL ID : 6n1m.1

Crystal structure of Fumarate hydratase class II from Legionella pneumophila Philadelphia 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-tetramer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: S.148, N.149 Chain B: K.332, N.334 Chain D: T.195, H.196 7 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A, 2 interactions with chain D Hydrogen bonds: B:N.334, A:S.148, A:N.149, A:N.149, D:T.195 Salt bridges: B:K.332, D:H.196 SO4.2: 4 residues within 4Å: Chain A: K.77, S.134, P.135, H.141 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.135 Salt bridges: A:K.77 SO4.6: 6 residues within 4Å: Chain A: K.332, N.334 Chain B: S.148, N.149 Chain C: T.195, H.196 7 PLIP interactions: 3 interactions with chain B, 2 interactions with chain C, 2 interactions with chain A Hydrogen bonds: B:S.148, B:N.149, B:N.149, C:T.195, A:N.334 Salt bridges: C:H.196, A:K.332 SO4.7: 4 residues within 4Å: Chain B: K.77, S.134, P.135, H.141 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:P.135 Salt bridges: B:K.77 SO4.11: 6 residues within 4Å: Chain B: T.195, H.196 Chain C: S.148, N.149 Chain D: K.332, N.334 8 PLIP interactions: 2 interactions with chain D, 2 interactions with chain B, 4 interactions with chain C Hydrogen bonds: D:N.334, C:S.148, C:N.149, C:N.149 Salt bridges: D:K.332, B:H.196 Water bridges: B:T.195, C:T.108 SO4.12: 4 residues within 4Å: Chain C: K.77, S.134, P.135, H.141 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:P.135 Salt bridges: C:K.77 SO4.16: 6 residues within 4Å: Chain A: T.195, H.196 Chain C: K.332, N.334 Chain D: S.148, N.149 8 PLIP interactions: 2 interactions with chain C, 4 interactions with chain D, 2 interactions with chain A Hydrogen bonds: C:N.334, D:S.148, D:N.149, D:N.149 Salt bridges: C:K.332, A:H.196 Water bridges: D:T.108, A:T.195 SO4.17: 4 residues within 4Å: Chain D: K.77, S.134, P.135, H.141 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:P.135 Salt bridges: D:K.77

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: H.8, M.9, A.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.9, A:A.10 EDO.4: 5 residues within 4Å: Chain A: S.26, D.27, Y.29, E.124, L.130 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.26, A:Y.29 EDO.5: 2 residues within 4Å: Chain A: E.51, H.54 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.54 Water bridges: A:E.51, A:E.51 EDO.8: 3 residues within 4Å: Chain B: H.8, M.9, A.10 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:M.9, B:A.10 EDO.9: 5 residues within 4Å: Chain B: S.26, D.27, Y.29, E.124, L.130 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.26, B:Y.29 EDO.10: 2 residues within 4Å: Chain B: E.51, H.54 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.54 Water bridges: B:E.51, B:E.51 EDO.13: 3 residues within 4Å: Chain C: H.8, M.9, A.10 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:M.9, C:A.10 EDO.14: 5 residues within 4Å: Chain C: S.26, D.27, Y.29, E.124, L.130 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.26, C:Y.29 EDO.15: 2 residues within 4Å: Chain C: E.51, H.54 2 PLIP interactions: 2 interactions with chain C Water bridges: C:E.51, C:E.51 EDO.18: 3 residues within 4Å: Chain D: H.8, M.9, A.10 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:M.9, D:A.10 EDO.19: 5 residues within 4Å: Chain D: S.26, D.27, Y.29, E.124, L.130 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.26, D:Y.29 EDO.20: 2 residues within 4Å: Chain D: E.51, H.54 2 PLIP interactions: 2 interactions with chain D Water bridges: D:E.51, D:E.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., Crystal structure of Fumarate hydratase class II from Legionella pneumophila Philadelphia 1. to be published

Release Date

2018-12-19

Peptides

Fumarate hydratase class II: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Fumarate hydratase class II