SMTL ID : 6n29.1 (1 other biounit)

Crystal structure of monomeric von Willebrand Factor D`D3 assembly

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.94 No protein-ligand interaction detected (PLIP) NAG.2: 3 residues within 4Å: Chain A: Y.383, N.384, P.388 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.384 NAG.3: 2 residues within 4Å: Chain A: N.468, T.470 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.468

2 x CA: CALCIUM ION(Non-covalent)

CA.4: 6 residues within 4Å: Chain A: D.116, N.235, D.237, I.239, N.242, D.243 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.116, A:D.237, A:I.239, A:D.243 CA.5: 2 residues within 4Å: Chain A: E.398, G.440 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.398, A:G.440, H2O.1, H2O.2, H2O.2

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 3 residues within 4Å: Chain A: H.463, T.470, E.472 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.470, A:T.470

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, X. et al., The von Willebrand factor D'D3 assembly and structural principles for factor VIII binding and concatemer biogenesis. Blood (2019)

Release Date

2019-01-23

Peptides

von Willebrand factor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

von Willebrand factor

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