SMTL ID : 6n3p.1

Crosslinked AcpP=FabZ complex from E. coli Type II FAS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-6-6-mer

Ligands

6 x XLN: N~3~-{(2R)-4-[(dihydroxyphosphanyl)oxy]-2-hydroxy-3,3-dimethylbutanoyl}-N-(3-{[(1Z)-pent-1-en-1-yl]sulfonyl}propyl)-beta-alaninamide(Covalent)

XLN.1: 18 residues within 4Å: Chain A: H.57, F.64, P.65, G.66, F.104, K.105, R.106, P.107 Chain B: H.22, E.71, Y.94, Y.95, F.96, A.97, A.149 Chain I: D.38, S.39, L.40 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain I Hydrophobic interactions: B:Y.95, B:A.97, I:D.38, I:L.40 Hydrogen bonds: B:F.96, I:S.39 XLN.2: 16 residues within 4Å: Chain A: H.22, E.71, Y.94, Y.95, F.96 Chain B: H.57, F.58, F.64, P.65, G.66, F.104, K.105, R.106, P.107 Chain K: S.39, L.40 6 PLIP interactions: 2 interactions with chain A, 1 interactions with chain K, 3 interactions with chain B Hydrophobic interactions: A:Y.95, K:L.40, B:F.58, B:F.104 Hydrogen bonds: A:F.96, B:F.104 XLN.3: 15 residues within 4Å: Chain C: H.57, F.64, P.65, G.66, F.104, K.105, R.106, P.107 Chain D: H.22, E.71, Y.94, Y.95, F.96 Chain L: S.39, L.40 5 PLIP interactions: 1 interactions with chain D, 2 interactions with chain C, 2 interactions with chain L Hydrophobic interactions: D:Y.95, L:L.40 Hydrogen bonds: C:K.105, L:S.39 Water bridges: C:R.106 XLN.4: 13 residues within 4Å: Chain C: Y.94, Y.95, F.96 Chain D: H.57, F.58, F.64, P.65, G.66, F.104, K.105, R.106, P.107 Chain H: S.39 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:Y.95, C:Y.95, D:F.58 Hydrogen bonds: C:F.96 XLN.5: 16 residues within 4Å: Chain E: H.57, F.58, P.65, G.66, F.104, K.105, R.106, P.107 Chain F: H.22, E.71, Y.94, Y.95, F.96, R.125 Chain G: S.39, L.40 7 PLIP interactions: 3 interactions with chain F, 1 interactions with chain G, 3 interactions with chain E Hydrogen bonds: F:Y.95, F:F.96, E:F.104 Salt bridges: F:R.125 Hydrophobic interactions: G:L.40, E:F.58, E:F.104 XLN.6: 18 residues within 4Å: Chain E: L.93, Y.94, Y.95, F.96, S.151, E.153 Chain F: H.57, F.58, I.63, F.64, P.65, G.66, F.104, K.105, R.106, P.107 Chain J: D.38, S.39 11 PLIP interactions: 6 interactions with chain E, 5 interactions with chain F Hydrophobic interactions: E:L.93, E:Y.95, E:Y.95, F:F.58, F:F.58, F:I.63, F:F.104 Hydrogen bonds: E:F.96, E:S.151, E:E.153, F:F.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dodge, G.J. et al., Structural and dynamical rationale for fatty acid unsaturation inEscherichia coli. Proc. Natl. Acad. Sci. U.S.A. (2019)

Release Date

2019-03-13

Peptides

3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ: ABCDEF
Acyl carrier protein: GHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ

Acyl carrier protein