SMTL ID : 6n48.1

Structure of beta2 adrenergic receptor bound to BI167107, Nanobody 6B9, and a positive allosteric modulator

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x P0G: 8-[(1R)-2-{[1,1-dimethyl-2-(2-methylphenyl)ethyl]amino}-1-hydroxyethyl]-5-hydroxy-2H-1,4-benzoxazin-3(4H)-one(Non-covalent)

P0G.1: 17 residues within 4Å: Chain A: W.258, T.259, D.262, V.263, V.266, C.340, F.342, A.349, S.352, S.356, F.410, F.411, N.414, Y.429, I.430, N.433, Y.437 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:W.258, A:T.259, A:V.263, A:V.266, A:F.342, A:F.342, A:F.342, A:F.410, A:I.430 Hydrogen bonds: A:D.262, A:S.352, A:S.352, A:S.356, A:S.356, A:N.414, A:Y.429, A:N.433, A:N.433 pi-Stacking: A:F.411

1 x 1WV: (2S)-2,3-dihydroxypropyl (7Z)-tetradec-7-enoate(Non-covalent)

1WV.2: 8 residues within 4Å: Chain A: M.185, M.189, I.192, I.243, K.246, E.427, I.430, W.434 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.192, A:I.243, A:I.430, A:W.434

1 x KBY: N-[(3R)-4-(4-tert-butylphenyl)-3-({2-[(4-methoxyphenyl)sulfanyl]-5-[methyl(propan-2-yl)sulfamoyl]benzene-1-carbonyl}amino)butanoyl]glycine(Non-covalent)

KBY.3: 9 residues within 4Å: Chain A: V.275, D.279, F.282, S.286, L.293, L.294, K.298, V.301, I.302 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.282, A:L.293, A:L.293, A:L.294, A:V.301, A:I.302, A:I.302 Hydrogen bonds: A:K.298

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, X. et al., Mechanism of beta2AR regulation by an intracellular positive allosteric modulator. Science (2019)

Release Date

2019-06-26

Peptides

Endolysin,Beta-2 adrenergic receptor,Beta-2 adrenergic receptor chimera: A
Camelid Antibody Fragment: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Endolysin,Beta-2 adrenergic receptor,Beta-2 adrenergic receptor chimera

Camelid Antibody Fragment

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