Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 6n4e.1
hPGDS complexed with a quinoline-3-carboxamide
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.65 Å
Oligo State
homo-dimer
Ligands
2 x
GSH
:
GLUTATHIONE
(Non-covalent)
GSH.1:
11 residues within 4Å:
Chain A:
Y.9
,
F.10
,
R.15
,
W.40
,
K.44
,
K.51
,
I.52
,
P.53
,
Q.64
,
S.65
Chain B:
D.98
14
PLIP interactions
:
12 interactions with chain A
,
2 interactions with chain B
Hydrophobic interactions:
A:K.51
Hydrogen bonds:
A:W.40
,
A:I.52
,
A:I.52
,
A:Q.64
,
A:S.65
,
B:D.98
Water bridges:
A:Q.64
,
A:L.66
,
A:D.97
,
B:D.94
Salt bridges:
A:R.15
,
A:K.44
,
A:K.51
GSH.3:
11 residues within 4Å:
Chain A:
D.98
Chain B:
Y.9
,
F.10
,
R.15
,
W.40
,
K.44
,
K.51
,
I.52
,
P.53
,
Q.64
,
S.65
14
PLIP interactions
:
13 interactions with chain B
,
1 interactions with chain A
Hydrophobic interactions:
B:K.51
Hydrogen bonds:
B:W.40
,
B:I.52
,
B:I.52
,
B:Q.64
,
B:S.65
,
A:D.98
Water bridges:
B:R.15
,
B:Q.64
,
B:L.66
,
B:D.97
Salt bridges:
B:R.15
,
B:K.44
,
B:K.51
2 x
KCD
:
7-(difluoromethoxy)-N-[trans-4-(2-hydroxypropan-2-yl)cyclohexyl]quinoline-3-carboxamide
(Non-covalent)
KCD.2:
13 residues within 4Å:
Chain A:
F.10
,
M.12
,
G.14
,
R.15
,
Q.37
,
W.40
,
M.100
,
W.105
,
A.106
,
Y.153
,
I.156
,
C.157
,
L.200
11
PLIP interactions
:
11 interactions with chain A
Hydrophobic interactions:
A:F.10
,
A:F.10
,
A:R.15
,
A:W.105
,
A:W.105
,
A:A.106
Hydrogen bonds:
A:Q.37
Water bridges:
A:G.14
pi-Stacking:
A:W.105
,
A:W.105
,
A:W.105
KCD.4:
13 residues within 4Å:
Chain B:
F.10
,
M.12
,
G.14
,
R.15
,
Q.37
,
W.40
,
M.100
,
W.105
,
A.106
,
Y.153
,
I.156
,
C.157
,
L.200
12
PLIP interactions
:
12 interactions with chain B
Hydrophobic interactions:
B:F.10
,
B:F.10
,
B:R.15
,
B:W.105
,
B:W.105
,
B:A.106
Hydrogen bonds:
B:Q.37
,
B:Y.153
Water bridges:
B:G.14
pi-Stacking:
B:W.105
,
B:W.105
,
B:W.105
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Deaton, D.N. et al., The discovery of quinoline-3-carboxamides as hematopoietic prostaglandin D synthase (H-PGDS) inhibitors. Bioorg. Med. Chem. (2019)
Release Date
2019-03-27
Peptides
Hematopoietic prostaglandin D synthase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
Hematopoietic prostaglandin D synthase
Toggle Identical (AB)
Related Entries With Identical Sequence
6ztc.1
|
7jr6.1
|
7jr8.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme