SMTL ID : 6n4n.1 (1 other biounit)

Crystal structure of the designed protein DNCR2/danoprevir/NS3a complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.112, C.114, C.160, H.164 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.112, A:C.114, A:C.160, A:H.164

1 x TSV: (2R,6S,12Z,13aS,14aR,16aS)-6-[(tert-butoxycarbonyl)amino]-14a-[(cyclopropylsulfonyl)carbamoyl]-5,16-dioxo-1,2,3,5,6,7,8 ,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-2-yl 4-fluoro-2H-isoindole-2-carboxylate(Non-covalent)

TSV.2: 26 residues within 4Å: Chain A: Q.56, F.58, V.70, H.72, G.73, D.94, D.96, R.138, I.147, L.150, K.151, G.152, S.153, A.154, F.169, R.170, A.171, A.172, D.183 Chain B: E.128, A.129, F.132, M.177, V.180, L.181, Y.184 22 PLIP interactions: 19 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:Q.56, A:F.58, A:F.58, A:V.70, A:D.96, A:I.147, A:L.150, A:A.154, A:F.169, A:A.171, A:A.172, B:F.132, B:M.177, B:Y.184 Hydrogen bonds: A:H.72, A:K.151, A:G.152, A:S.153, A:A.154, A:R.170, A:A.172, A:A.172

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: K.4, G.5, T.53, A.54, R.77 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.5, A:A.54 Salt bridges: A:R.77 SO4.4: 6 residues within 4Å: Chain A: K.95, D.136, R.170, I.185, P.186, S.189 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.189, A:S.189 Salt bridges: A:R.170 SO4.5: 3 residues within 4Å: Chain B: R.32, P.87, R.90 3 PLIP interactions: 3 interactions with chain B Water bridges: B:R.90 Salt bridges: B:R.32, B:R.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Foight, G.W. et al., Multi-input chemical control of protein dimerization for programming graded cellular responses. Nat.Biotechnol. (2019)

Release Date

2019-09-11

Peptides

NS3 protease: A
Rosetta-designed danoprevir/NS3a complex reader 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
F

NS3 protease

Rosetta-designed danoprevir/NS3a complex reader 2

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