SMTL ID : 6n4x.1

Metabotropic Glutamate Receptor 5 Apo Form Ligand Binding Domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.00 Å

Oligo State

homo-dimer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: K.449, N.451, L.461 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.451 NAG.2: 3 residues within 4Å: Chain A: R.214, Y.215, N.216 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.215 Hydrogen bonds: A:R.214, A:N.216 NAG.3: 1 residues within 4Å: Chain A: N.94 No protein-ligand interaction detected (PLIP) NAG.4: 2 residues within 4Å: Chain A: N.388, S.390 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.390 NAG.6: 2 residues within 4Å: Chain B: N.451, L.461 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:L.461 Hydrogen bonds: B:N.451 NAG.7: 1 residues within 4Å: Chain B: N.94 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.94

1 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 5 residues within 4Å: Chain B: I.85, N.86, D.88, L.91, L.92 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:I.85, B:D.88, B:L.91, B:L.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koehl, A. et al., Structural insights into the activation of metabotropic glutamate receptors. Nature (2019)

Release Date

2019-01-23

Peptides

Metabotropic glutamate receptor 5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Metabotropic glutamate receptor 5