SMTL ID : 6n6d.1

Vibrio cholerae Oligoribonuclease bound to pAG

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

monomer

Ligands

1 x A- G: RNA (5'-R(P*AP*G)-3')(Non-covalent)

A-G.1: 16 residues within 4Å: Chain A: D.12, L.13, E.14, M.15, G.17, L.18, D.59, W.61, C.62, H.66, N.107, S.108, Q.111, S.135, H.158 Ligands: NA.2 Protein-ligand interaction information (PLIP) not available

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: D.12 Ligands: A-G.1, A-G.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.12 Water bridges: A:N.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, S.K. et al., A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife (2019)

Release Date

2019-06-12

Peptides

Oligoribonuclease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Oligoribonuclease

Related Entries With Identical Sequence