SMTL ID : 6n9m.1

Crystal Structure of Adenosine Deaminase from Salmonella typhimurium with Pentostatin (Deoxycoformycin)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x DCF: 2'-DEOXYCOFORMYCIN(Non-covalent)

DCF.1: 17 residues within 4Å: Chain A: H.12, H.14, D.16, L.56, L.60, L.63, S.100, I.139, S.141, A.169, G.170, H.197, E.200, H.221, D.278, D.279 Ligands: ZN.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.60 Hydrogen bonds: A:D.16, A:S.100, A:G.170, A:E.200 pi-Stacking: A:H.14

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.12, H.14, H.197, D.278 Ligands: DCF.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.12, A:H.14, A:H.197, A:D.278

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 1 residues within 4Å: Chain A: E.328 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.328, A:E.328 CA.4: 2 residues within 4Å: Chain A: G.131, E.133 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:G.131, A:E.133, H2O.5, H2O.7

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.5: 2 residues within 4Å: Chain A: R.29, N.32 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maltseva, N. et al., Crystal Structure of Adenosine Deaminase from Salmonella typhimurium Complexed with Pentostatin (Deoxycoformycin) (CASP target). To Be Published

Release Date

2019-02-06

Peptides

Adenosine deaminase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Adenosine deaminase