SMTL ID : 6nb2.1

CRYSTAL STRUCTURE OF ENOLASE FROM LEGIONELLA PNEUMOPHILA BOUND TO 2-PHOSPHOGLYCERIC ACID AND MAGNESIUM

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x 2PG: 2-PHOSPHOGLYCERIC ACID(Non-covalent)

2PG.1: 18 residues within 4Å: Chain A: G.47, A.48, S.49, H.162, Q.170, E.171, E.212, D.249, E.292, D.319, L.342, K.344, H.372, R.373, S.374, K.395 Ligands: MG.2, MG.3 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:A.48, A:S.49, A:S.49, A:S.49, A:E.171, A:H.372, A:S.374, A:K.395 Water bridges: A:N.155, A:D.293 Salt bridges: A:H.162, A:K.344, A:K.344, A:R.373, A:K.395 2PG.9: 18 residues within 4Å: Chain B: G.47, A.48, S.49, H.162, Q.170, E.171, E.212, D.249, E.292, D.319, L.342, K.344, H.372, R.373, S.374, K.395 Ligands: MG.10, MG.11 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:A.48, B:S.49, B:S.49, B:Q.170, B:H.372, B:S.374, B:S.374, B:K.395 Water bridges: B:N.155, B:K.344, B:K.344 Salt bridges: B:H.162, B:K.344, B:K.344, B:R.373, B:K.395

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: D.249, E.292, D.319, K.395 Ligands: 2PG.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.249, A:E.292, A:D.319, H2O.2 MG.3: 4 residues within 4Å: Chain A: S.49, D.319, K.344 Ligands: 2PG.1 5 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:S.49, A:S.49, H2O.1, H2O.10, 2PG.1 MG.10: 5 residues within 4Å: Chain B: D.249, E.292, D.319, K.395 Ligands: 2PG.9 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.249, B:E.292, B:D.319, H2O.17 MG.11: 4 residues within 4Å: Chain B: S.49, D.319, K.344 Ligands: 2PG.9 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:S.49, B:S.49, H2O.14, H2O.24

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: Q.143, D.145, R.355, I.358, K.359 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.145, A:R.355 Water bridges: A:Q.143 EDO.5: 4 residues within 4Å: Chain A: V.184, Q.187, F.238 Chain B: K.64 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.187 Water bridges: A:Q.187 EDO.6: 6 residues within 4Å: Chain A: R.127, P.136, L.137, D.384, Q.410 Ligands: EDO.7 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.127, A:L.137 Water bridges: A:R.127, A:Q.410 EDO.7: 8 residues within 4Å: Chain A: P.136, L.137, Y.138, D.384, Q.410, R.413, I.414 Ligands: EDO.6 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.137, A:Y.138, A:Q.410, A:R.413 EDO.8: 5 residues within 4Å: Chain B: Q.143, D.145, R.355, I.358, K.359 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.145, B:R.355 Water bridges: B:Q.143, B:Q.143 EDO.12: 4 residues within 4Å: Chain A: K.64 Chain B: V.184, Q.187, F.238 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.187 EDO.13: 6 residues within 4Å: Chain B: P.136, L.137, Y.138, D.384, Q.410, R.413 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.137, B:Q.410, B:R.413

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davies, D.R. et al., CRYSTAL STRUCTURE OF ENOLASE FROM LEGIONELLA PNEUMOPHILA BOUND TO 2-PHOSPHOGLYCERIC ACID AND MAGNESIUM. To Be Published

Release Date

2019-01-23

Peptides

Enolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Enolase

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