SMTL ID : 6nbk.1 (2 other biounits)

Crystal structure of Arginase from Bacillus cereus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

homo-trimer

Ligands

8 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: D.121, H.123, D.224, D.226 Ligands: MN.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.121, A:H.123, A:D.224, H2O.2, H2O.6 MN.2: 5 residues within 4Å: Chain A: H.98, D.121, D.125, D.224 Ligands: MN.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.98, A:D.121, A:D.125, A:D.224, H2O.2 MN.3: 2 residues within 4Å: Chain A: D.82, E.86 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.82, A:D.82, A:E.86 MN.5: 5 residues within 4Å: Chain B: H.98, D.121, D.125, D.224 Ligands: MN.6 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.98, B:D.121, B:D.125, B:D.224 MN.6: 5 residues within 4Å: Chain B: D.121, H.123, D.224, D.226 Ligands: MN.5 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.121, B:H.123, B:D.224, B:D.226, B:D.226 MN.7: 2 residues within 4Å: Chain B: D.82, E.86 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.82, B:D.82, B:E.86 MN.9: 5 residues within 4Å: Chain C: H.98, D.121, D.125, D.224 Ligands: MN.10 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.98, C:D.121, C:D.125, C:D.224, H2O.24 MN.10: 5 residues within 4Å: Chain C: D.121, H.123, D.224, D.226 Ligands: MN.9 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.121, C:H.123, C:D.224, C:D.226, H2O.24

3 x CA: CALCIUM ION(Non-covalent)

CA.4: 1 residues within 4Å: Chain A: D.275 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.275, H2O.2, H2O.5, H2O.10 CA.8: 1 residues within 4Å: Chain B: D.275 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.275, H2O.14, H2O.16 CA.11: 1 residues within 4Å: Chain C: D.275 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.275, H2O.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, C. et al., Crystal structure of Arginase from Bacillus cereus. To Be Published

Release Date

2018-12-19

Peptides

Arginase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Arginase

Related Entries With Identical Sequence