SMTL ID : 6nbs.1

WT ERK2 with compound 2507-8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: A.316, Y.324 No protein-ligand interaction detected (PLIP)

1 x KJ7: (5S)-5-benzyl-4,5-dihydro-1H-imidazol-2-amine(Non-covalent)

KJ7.3: 4 residues within 4Å: Chain A: D.131, H.132, Y.135, Y.323 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:D.131, A:Y.135, A:Y.135 Hydrogen bonds: A:Y.323, A:Y.323 pi-Stacking: A:H.132, A:Y.135

1 x KJ4: N-{3-[(2Z,4S)-1-(2-{[2-(2-amino-1H-imidazol-1-yl)ethyl](methyl)amino}ethyl)-3-(3-cyclohexylpropyl)-2-iminoimidazolidin-4-yl]propyl}guanidine(Non-covalent)

KJ4.4: 8 residues within 4Å: Chain A: Y.138, E.321, Q.322, Y.323, Y.324, D.325, P.326, D.328 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.138, A:Y.138 Water bridges: A:A.316, A:E.321 Salt bridges: A:E.321, A:D.325, A:D.328

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sammons, R.M. et al., A Novel Class of Common Docking Domain Inhibitors That Prevent ERK2 Activation and Substrate Phosphorylation. Acs Chem.Biol. (2019)

Release Date

2019-07-31

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1