- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x TRP: TRYPTOPHAN(Non-covalent)
- 6 x ACT: ACETATE ION(Non-functional Binders)
ACT.2: 4 residues within 4Å:- Chain A: K.303, E.306, L.307, F.313
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:E.306, A:L.307, A:F.313
- Hydrogen bonds: A:E.306
- Salt bridges: A:K.303
ACT.15: 7 residues within 4Å:- Chain B: L.111, P.113, H.116, L.172, D.175, I.176, T.179
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:L.172, B:D.175, B:I.176
- Water bridges: B:T.179
- Salt bridges: B:H.116
ACT.16: 2 residues within 4Å:- Chain B: H.337, R.347
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:R.347
- Salt bridges: B:H.337, B:R.347
ACT.18: 4 residues within 4Å:- Chain B: W.29, M.34, L.260, F.296
1 PLIP interactions:1 interactions with chain B- Water bridges: B:F.261
ACT.19: 6 residues within 4Å:- Chain B: V.249, E.250, G.251, F.255, I.256, D.259
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:I.256
- Hydrogen bonds: B:G.251, B:F.255
- Salt bridges: B:K.272
ACT.20: 3 residues within 4Å:- Chain B: E.229, R.232, K.233
No protein-ligand interaction detected (PLIP)- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 8 residues within 4Å:- Chain A: D.18, R.19, P.20, T.21, G.22, L.24, H.28, V.76
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.21, A:G.22, A:H.28
EDO.4: 6 residues within 4Å:- Chain A: K.345, W.346, I.349
- Chain B: Y.74, P.311, E.315
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:E.315, B:E.315, A:K.345, A:W.346
EDO.5: 7 residues within 4Å:- Chain A: L.111, P.113, H.116, L.172, D.175, I.176, T.179
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:H.116, A:T.179
EDO.6: 5 residues within 4Å:- Chain A: R.240, H.242, A.243, R.281, D.282
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.240, A:R.240, A:D.282
EDO.7: 3 residues within 4Å:- Chain A: S.131, E.134, E.135
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.134
EDO.8: 4 residues within 4Å:- Chain A: T.21, G.22, K.23, D.75
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.23, A:K.23, A:K.23, A:D.75
EDO.9: 6 residues within 4Å:- Chain A: S.82, V.83, G.84, P.299, F.300, K.303
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.82
EDO.10: 6 residues within 4Å:- Chain A: Q.228, I.231, R.232, K.286, A.287, A.290
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.286
EDO.11: 4 residues within 4Å:- Chain A: V.249, E.250, D.259, K.272
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.272
- Water bridges: A:V.249, A:D.259
EDO.12: 4 residues within 4Å:- Chain A: T.61
- Chain B: M.110, L.111, T.179
1 PLIP interactions:1 interactions with chain B- Water bridges: B:R.182
EDO.17: 5 residues within 4Å:- Chain B: Y.144, Q.148, N.166, H.169
- Ligands: TRP.14
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Y.144, B:Q.148
- 1 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dranow, D.M. et al., Crystal Structure of Tryptophan-tRNA ligase from Chlamydia trachomatis with bound L-tryptophan. to be published
- Release Date
- 2018-12-26
- Peptides
- Tryptophan--tRNA ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x TRP: TRYPTOPHAN(Non-covalent)
- 6 x ACT: ACETATE ION(Non-functional Binders)
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dranow, D.M. et al., Crystal Structure of Tryptophan-tRNA ligase from Chlamydia trachomatis with bound L-tryptophan. to be published
- Release Date
- 2018-12-26
- Peptides
- Tryptophan--tRNA ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B