SMTL ID : 6ndl.1

Crystal structure of Staphylococcus aureus biotin protein ligase in complex with a sulfonamide inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: H.167, Q.170, D.235, N.237, Q.243 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.167, A:Q.170, A:N.237 Water bridges: A:H.167, A:D.235, A:N.237 GOL.2: 9 residues within 4Å: Chain A: Y.13, K.16, Q.62, L.63, Y.75, D.240, Y.242, Q.243, E.246 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.63, A:D.240, A:Q.243, A:E.246, A:E.246 GOL.3: 4 residues within 4Å: Chain A: A.26, E.27, N.30, I.31 1 PLIP interactions: 1 interactions with chain A Water bridges: A:I.31 GOL.4: 6 residues within 4Å: Chain A: K.37, I.40, D.41, K.44, S.52, H.58 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.41, A:S.52 Water bridges: A:K.44 GOL.5: 4 residues within 4Å: Chain A: I.272, W.278, N.279, I.296 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.279, A:I.296

1 x BQX: 1-[4-(6-aminopurin-9-yl)butylsulfamoyl]-3-[4-[(4~{S})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]butyl]urea(Non-covalent)

BQX.6: 26 residues within 4Å: Chain A: S.93, T.94, Q.95, Q.116, G.119, R.120, G.121, R.122, R.125, H.126, W.127, S.128, M.137, S.138, N.179, D.180, K.187, G.190, F.191, L.192, G.208, I.209, G.210, N.212, I.224, A.228 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:W.127, A:W.127, A:L.192 Hydrogen bonds: A:T.94, A:T.94, A:Q.95, A:Q.116, A:R.120, A:R.120, A:R.122, A:R.125, A:S.128, A:S.128, A:N.179, A:D.180, A:K.187, A:N.212 Water bridges: A:L.96, A:R.122, A:K.176, A:Y.182, A:Q.215 pi-Stacking: A:W.127, A:W.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, K.J. et al., Sulfonamide-Based Inhibitors of Biotin Protein Ligase as New Antibiotic Leads. Acs Chem.Biol. (2019)

Release Date

2019-12-18

Peptides

Biotin Protein Ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Biotin Protein Ligase