SMTL ID : 6ndz.1 (2 other biounits)

Designed repeat protein in complex with Fz8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

hetero-1-1-mer

Ligands

4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 4 residues within 4Å: Chain A: T.8, D.32 Chain B: M.47, N.48 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.32 Water bridges: A:D.32, A:D.32, A:D.32 MPD.6: 4 residues within 4Å: Chain B: I.91, S.92, K.93, G.94 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.94 MPD.7: 4 residues within 4Å: Chain B: G.16, N.17, K.18, D.19 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:K.18, B:D.19 Hydrogen bonds: B:D.19 MPD.8: 4 residues within 4Å: Chain A: A.97 Chain B: Q.67, S.68, A.69 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.97

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 5 residues within 4Å: Chain A: L.2, Y.21, K.70, K.71, P.72 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.2, A:K.70 Hydrogen bonds: A:K.71 ACT.3: 2 residues within 4Å: Chain A: C.4, Y.19 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.4 Water bridges: A:Y.19 ACT.4: 2 residues within 4Å: Chain A: G.16, M.118 No protein-ligand interaction detected (PLIP)

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.5: 5 residues within 4Å: Chain A: G.14, I.15, G.16, Y.17, Q.18 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Q.18 Hydrogen bonds: A:Q.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dang, L.T. et al., Receptor subtype discrimination using extensive shape complementary designed interfaces. Nat.Struct.Mol.Biol. (2019)

Release Date

2019-05-15

Peptides

Frizzled-8: A
Designed repeat binding protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Frizzled-8

Designed repeat binding protein

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