SMTL ID : 6nes.1 (2 other biounits)

FAD-dependent monooxygenase TropB from T. stipitatus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

5 x HEZ: HEXANE-1,6-DIOL(Non-covalent)

HEZ.1: 11 residues within 4Å: Chain A: G.53, M.54, A.55, A.121, C.122, L.226, Y.239, P.240, V.241, G.332 Ligands: FAD.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.121, A:Y.239, A:Y.239 HEZ.2: 9 residues within 4Å: Chain A: G.20, E.42, R.45, G.46, F.47, L.128, V.132, V.140, C.142 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.47, A:F.47, A:V.132 HEZ.6: 12 residues within 4Å: Chain B: G.53, M.54, A.55, A.121, C.122, R.123, L.226, Y.239, P.240, V.241, A.242 Ligands: FAD.9 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:A.121, B:Y.239 Hydrogen bonds: B:R.123 HEZ.7: 7 residues within 4Å: Chain B: F.203, D.255, W.259, L.263, E.273, Y.277, R.298 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.298 Water bridges: B:D.255, B:Y.277, B:Y.277, B:R.298 HEZ.8: 5 residues within 4Å: Chain B: F.188, S.192, Y.194, P.310, F.311 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:Y.194, B:Y.194, B:P.310

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: R.34, A.350, F.353, V.354, R.357 Chain B: W.73, R.76, S.77 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.76 Water bridges: A:R.34

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.4: 37 residues within 4Å: Chain A: V.18, G.19, G.20, G.21, I.22, I.23, G.24, F.41, E.42, Q.43, A.44, R.48, M.54, A.55, F.56, R.124, K.144, R.145, L.146, A.176, D.177, G.178, I.179, R.182, R.206, W.299, G.321, D.322, A.323, P.329, G.332, A.333, G.334, A.335, C.336 Ligands: HEZ.1, CL.5 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:P.329 Hydrogen bonds: A:G.21, A:I.23, A:G.24, A:E.42, A:E.42, A:Q.43, A:Q.43, A:A.55, A:A.55, A:R.124, A:R.124, A:L.146, A:L.146, A:D.322, A:D.322, A:G.334, A:A.335, A:C.336 Water bridges: A:I.22, A:I.22, A:E.49, A:I.179, A:I.179, A:R.182, A:R.182, A:A.323, A:A.323, A:G.338 pi-Cation interactions: A:R.124 FAD.9: 38 residues within 4Å: Chain B: V.18, G.19, G.20, G.21, I.22, I.23, G.24, F.41, E.42, Q.43, A.44, E.49, M.54, A.55, F.56, R.124, K.144, R.145, L.146, A.176, D.177, G.178, I.179, R.182, R.206, W.299, M.301, G.321, D.322, A.323, P.329, G.332, A.333, G.334, A.335, C.336 Ligands: HEZ.6, CL.10 33 PLIP interactions: 33 interactions with chain B Hydrophobic interactions: B:P.329 Hydrogen bonds: B:G.21, B:I.23, B:G.24, B:E.42, B:E.42, B:Q.43, B:Q.43, B:E.49, B:E.49, B:A.55, B:A.55, B:R.124, B:R.124, B:L.146, B:L.146, B:D.322, B:D.322, B:G.334, B:A.335, B:C.336 Water bridges: B:I.22, B:E.49, B:E.49, B:I.179, B:I.179, B:R.182, B:R.182, B:D.322, B:A.323, B:A.323 pi-Cation interactions: B:R.124, B:R.124

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 5 residues within 4Å: Chain A: P.329, G.332, A.333, G.334 Ligands: FAD.4 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain B: P.329, G.332, A.333, G.334 Ligands: FAD.9 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rodriguez Benitez, A. et al., Structural basis for selectivity in flavin-dependent monooxygenase-catalyzed oxidative dearomatization. Acs Catalysis (2019)

Release Date

2019-08-14

Peptides

FAD-dependent monooxygenase tropB: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

FAD-dependent monooxygenase tropB

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