SMTL ID : 6nf1.1

Vav1 inhibited by an allosteric inhibitor: Vav1 inhibitors block GEF activity

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x 9JY: (2S)-3-[(3S)-1-(ethylsulfonyl)piperidin-3-yl]-2-{[3-(4-methylphenyl)imidazo[1,2-a]pyrazin-8-yl]amino}propan-1-ol(Non-covalent)

9JY.1: 21 residues within 4Å: Chain A: F.280, L.281, Y.283, G.284, R.285, V.336, L.369, C.372, V.373, V.376, F.526, E.527, E.528, T.529, T.530, L.538, L.539, R.540, G.541, T.542, Q.545 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.281, A:Y.283, A:V.336, A:T.542 Hydrogen bonds: A:T.530, A:T.530, A:G.541, A:G.541 Water bridges: A:R.285, A:R.285

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 8 residues within 4Å: Chain A: E.375, R.405, L.538, L.539, R.540, Y.544, Q.545, H.557 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.540, A:R.540 Water bridges: A:R.405, A:R.405 Salt bridges: A:E.375, A:R.540, A:H.557

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.532, C.535, H.557, C.560 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.532, A:C.535, A:H.557, A:C.560 ZN.4: 4 residues within 4Å: Chain A: H.519, C.549, C.552, C.567 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.519, A:C.549, A:C.552, A:C.567

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gerspacher, M. et al., Allosteric Inhibitors of VAV1 Block Guanine Nucleotide Exchange Activity. To Be Published

Release Date

2019-12-25

Peptides

Proto-oncogene vav: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Proto-oncogene vav