SMTL ID : 6nfk.1

Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B with loop 7 from APOBEC3G bound to iodide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 1 residues within 4Å: Chain A: L.186 No protein-ligand interaction detected (PLIP) EDO.2: 4 residues within 4Å: Chain A: D.146, E.147, E.149, Y.150 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.150 EDO.3: 4 residues within 4Å: Chain A: Y.6, Y.33, G.51, F.52 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.52

1 x IOD: IODIDE ION(Non-functional Binders)

IOD.4: 8 residues within 4Å: Chain A: Q.62, W.84, I.86, S.89, P.90, C.91, I.114, L.133 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, K. et al., Active site plasticity and possible modes of chemical inhibition of the human DNA deaminase APOBEC3B. Faseb Bioadv (2020)

Release Date

2019-12-25

Peptides

DNA dC->dU-editing enzyme APOBEC-3B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA dC->dU-editing enzyme APOBEC-3B