SMTL ID : 6nfx.1

MBTD1 MBT repeats

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

38 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 2 residues within 4Å: Chain A: T.375, H.387 Ligand excluded by PLIP UNX.2: 3 residues within 4Å: Chain A: S.4, W.5 Ligands: UNX.3 Ligand excluded by PLIP UNX.3: 4 residues within 4Å: Chain A: S.4, W.5, G.6 Ligands: UNX.2 Ligand excluded by PLIP UNX.4: 4 residues within 4Å: Chain A: L.272, A.273, D.274, G.275 Ligand excluded by PLIP UNX.5: 3 residues within 4Å: Chain A: D.400, E.402, S.403 Ligand excluded by PLIP UNX.6: 5 residues within 4Å: Chain A: V.155, V.156, T.164, L.199 Ligands: UNX.7 Ligand excluded by PLIP UNX.7: 4 residues within 4Å: Chain A: P.198, L.199, H.201 Ligands: UNX.6 Ligand excluded by PLIP UNX.8: 4 residues within 4Å: Chain A: Y.295, H.296, S.299 Ligands: UNX.9 Ligand excluded by PLIP UNX.9: 2 residues within 4Å: Chain A: S.299 Ligands: UNX.8 Ligand excluded by PLIP UNX.10: 2 residues within 4Å: Chain A: Y.417, Q.418 Ligand excluded by PLIP UNX.11: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.12: 6 residues within 4Å: Chain A: R.176, W.192, C.193, V.363, P.368, D.405 Ligand excluded by PLIP UNX.13: 3 residues within 4Å: Chain A: H.352, G.353, F.354 Ligand excluded by PLIP UNX.14: 2 residues within 4Å: Chain A: D.77, G.79 Ligand excluded by PLIP UNX.15: 3 residues within 4Å: Chain A: Y.114, R.124 Ligands: UNX.28 Ligand excluded by PLIP UNX.16: 1 residues within 4Å: Chain A: T.109 Ligand excluded by PLIP UNX.17: 3 residues within 4Å: Chain A: P.149, S.171, V.172 Ligand excluded by PLIP UNX.18: 1 residues within 4Å: Chain A: K.158 Ligand excluded by PLIP UNX.19: 3 residues within 4Å: Chain A: Y.181, E.183, S.184 Ligand excluded by PLIP UNX.20: 2 residues within 4Å: Chain A: E.170, R.178 Ligand excluded by PLIP UNX.21: 3 residues within 4Å: Chain A: H.202, G.204, S.208 Ligand excluded by PLIP UNX.22: 2 residues within 4Å: Chain A: R.212, F.213 Ligand excluded by PLIP UNX.23: 2 residues within 4Å: Chain A: K.247, E.248 Ligand excluded by PLIP UNX.24: 3 residues within 4Å: Chain A: I.313, E.314, R.378 Ligand excluded by PLIP UNX.25: 2 residues within 4Å: Chain A: T.322, L.324 Ligand excluded by PLIP UNX.26: 3 residues within 4Å: Chain A: R.385, E.393, D.396 Ligand excluded by PLIP UNX.27: 5 residues within 4Å: Chain A: H.24, P.404, L.406, Y.407 Ligands: UNX.33 Ligand excluded by PLIP UNX.28: 4 residues within 4Å: Chain A: F.120, K.123, R.124 Ligands: UNX.15 Ligand excluded by PLIP UNX.29: 1 residues within 4Å: Chain A: H.381 Ligand excluded by PLIP UNX.30: 5 residues within 4Å: Chain A: P.133, D.134, F.135, S.136, Q.137 Ligand excluded by PLIP UNX.31: 4 residues within 4Å: Chain A: P.317, L.324, P.325, F.326 Ligand excluded by PLIP UNX.32: 3 residues within 4Å: Chain A: H.202, I.203, P.230 Ligand excluded by PLIP UNX.33: 7 residues within 4Å: Chain A: F.22, K.23, H.24, A.25, S.403, L.406 Ligands: UNX.27 Ligand excluded by PLIP UNX.34: 5 residues within 4Å: Chain A: A.128, K.129, T.130, K.448, T.449 Ligand excluded by PLIP UNX.35: 2 residues within 4Å: Chain A: E.244, W.245 Ligand excluded by PLIP UNX.36: 5 residues within 4Å: Chain A: V.156, L.161, H.211, F.293, C.294 Ligand excluded by PLIP UNX.37: 2 residues within 4Å: Chain A: T.298, K.347 Ligand excluded by PLIP UNX.38: 3 residues within 4Å: Chain A: V.356, R.378, I.379 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.39: 4 residues within 4Å: Chain A: D.186, T.188, D.189, D.190 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.189, A:D.190

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.40: 7 residues within 4Å: Chain A: E.154, V.166, G.204, W.205, S.206, R.207, F.213 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.154, A:E.154, A:G.204, A:S.206, A:R.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, H. et al., Structural Basis for EPC1-Mediated Recruitment of MBTD1 into the NuA4/TIP60 Acetyltransferase Complex. Cell Rep (2020)

Release Date

2019-01-30

Peptides

MBT domain-containing protein 1,Enhancer of polycomb homolog 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MBT domain-containing protein 1,Enhancer of polycomb homolog 1