SMTL ID : 6nfy.1

Crystal structure of nonphosphorylated, HPK1 kinase domain in complex with sunitinib in the inactive state.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

homo-dimer

Ligands

2 x B49: N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carbo xamide(Non-covalent)

B49.1: 14 residues within 4Å: Chain A: L.16, A.37, K.39, V.68, M.84, E.85, F.86, C.87, G.88, G.90, D.94, L.137, A.147 Chain B: A.160 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.16, A:L.16, A:K.39, A:V.68, A:F.86, A:L.137 Hydrogen bonds: A:E.85, A:C.87, A:C.87, A:D.94 Salt bridges: A:D.94 B49.2: 17 residues within 4Å: Chain A: A.160 Chain B: L.16, A.37, K.39, V.68, M.84, E.85, F.86, C.87, G.88, A.89, G.90, D.94, V.98, L.137, A.147, L.284 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:L.16, B:L.16, B:V.68, B:M.84, B:F.86, B:D.94, B:V.98, B:L.137, B:A.147, B:L.284 Hydrogen bonds: B:E.85, B:C.87, B:C.87, B:D.94 Salt bridges: B:D.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Johnson, E. et al., Multiple conformational states of the HPK1 kinase domain in complex with sunitinib reveal the structural changes accompanying HPK1 trans-regulation. J.Biol.Chem. (2019)

Release Date

2019-05-01

Peptides

Mitogen-activated protein kinase kinase kinase kinase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Mitogen-activated protein kinase kinase kinase kinase 1