SMTL ID : 6nfz.1

Crystal structure of diphosphorylated HPK1 kinase domain in complex with sunitinib in the active state.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.97 Å

Oligo State

homo-dimer

Ligands

2 x B49: N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carbo xamide(Non-covalent)

B49.1: 22 residues within 4Å: Chain A: L.25, G.26, T.29, V.33, K.35, A.46, V.77, M.93, E.94, F.95, C.96, G.97, A.98, G.99, S.100, D.103, I.104, V.107, L.146, A.156, D.157, L.293 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.25, A:V.33, A:V.33, A:F.95, A:L.146, A:A.156 Hydrogen bonds: A:E.94, A:C.96, A:C.96 Salt bridges: A:D.103 B49.2: 20 residues within 4Å: Chain B: L.25, V.33, A.46, K.48, V.77, M.93, E.94, F.95, C.96, G.97, A.98, G.99, S.100, D.103, I.104, V.107, L.146, A.156, D.157, L.293 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:L.25, B:V.77, B:F.95, B:L.146, B:L.146, B:A.156 Hydrogen bonds: B:E.94, B:C.96, B:C.96, B:D.103 Salt bridges: B:D.103 Halogen bonds: B:K.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Johnson, E. et al., Multiple conformational states of the HPK1 kinase domain in complex with sunitinib reveal the structural changes accompanying HPK1 trans-regulation. J.Biol.Chem. (2019)

Release Date

2019-05-01

Peptides

Mitogen-activated protein kinase kinase kinase kinase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Mitogen-activated protein kinase kinase kinase kinase 1