SMTL ID : 6ng0.1

Crystal structure of HPK1 kinase domain T165E,S171E phosphomimetic mutant in complex with sunitinib in the inactive state.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x B49: N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carbo xamide(Non-covalent)

B49.1: 14 residues within 4Å: Chain A: Q.23, L.25, A.46, K.48, M.93, E.94, F.95, C.96, G.97, G.99, D.103, L.146, A.156, D.157 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.25, A:L.25, A:F.95, A:L.146, A:L.146 Hydrogen bonds: A:E.94, A:C.96, A:C.96, A:D.103 Salt bridges: A:D.103 B49.2: 12 residues within 4Å: Chain B: L.25, A.46, M.93, E.94, F.95, C.96, G.97, G.99, D.103, L.146, D.157, F.158 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:L.25, B:M.93, B:F.95, B:L.146 Hydrogen bonds: B:E.94, B:C.96, B:C.96, B:D.103 Salt bridges: B:D.103 pi-Stacking: B:F.158 Halogen bonds: B:D.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Johnson, E. et al., Multiple conformational states of the HPK1 kinase domain in complex with sunitinib reveal the structural changes accompanying HPK1 trans-regulation. J.Biol.Chem. (2019)

Release Date

2019-05-01

Peptides

Mitogen-activated protein kinase kinase kinase kinase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Mitogen-activated protein kinase kinase kinase kinase 1