SMTL ID : 6nhk.1 (1 other biounit)

Mortalin nucleotide binding domain in the ADP-bound state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.78 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 18 residues within 4Å: Chain A: D.13, G.15, T.17, N.18, G.200, G.201, G.229, E.267, K.270, C.271, S.274, G.341, G.342, M.343, R.345, D.368 Ligands: PO4.2, MG.3 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:T.17, A:N.18, A:N.18, A:G.201, A:E.267, A:K.270, A:C.271, A:S.274, A:G.342, A:R.345 Water bridges: A:D.233

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 8 residues within 4Å: Chain A: G.15, T.16, K.75, E.176, T.203, D.205 Ligands: ADP.1, MG.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.16, A:E.176, A:T.203, A:T.203, A:D.205 Salt bridges: A:K.75

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: D.198 Ligands: ADP.1, PO4.2 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: Y.150, D.205, T.221, N.222, G.223, T.225 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.205 Water bridges: A:N.222, A:G.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moseng, M.A. et al., Biophysical Consequences of EVEN-PLUS Syndrome Mutations for the Function of Mortalin. J.Phys.Chem.B (2019)

Release Date

2019-04-17

Peptides

Stress-70 protein, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Stress-70 protein, mitochondrial

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