- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.35 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x KQD: (3S,4S,3'S,4'S)-1,1'-(1,4-phenylenedicarbonyl)bis{N~3~,N~4~-bis[(1S,2R)-2-phenylcyclopropyl]pyrrolidine-3,4-dicarboxami de}(Non-covalent)
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)
NAG.4: 4 residues within 4Å:- Chain A: F.175, N.199, S.222, L.250
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:F.175
- Hydrogen bonds: A:N.199
NAG.5: 4 residues within 4Å:- Chain A: P.387, S.388, K.413, N.414
No protein-ligand interaction detected (PLIP)NAG.6: 11 residues within 4Å:- Chain A: R.395, D.419, S.421, K.422, Y.440, N.442, S.444, I.461, D.463, Y.483
- Ligands: NAG.7
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.421, A:D.463
NAG.7: 2 residues within 4Å:- Chain A: K.422
- Ligands: NAG.6
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.422
NAG.9: 2 residues within 4Å:- Chain B: E.93, N.114
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.114
NAG.10: 5 residues within 4Å:- Chain B: P.387, S.388, K.413, N.414, K.437
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:P.387
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Su, L. et al., Structural Basis of TLR2/TLR1 Activation by the Synthetic Agonist Diprovocim. J. Med. Chem. (2019)
- Release Date
- 2019-04-17
- Peptides
- Toll-like receptor 2,Variable lymphocyte receptor B: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.35 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x KQD: (3S,4S,3'S,4'S)-1,1'-(1,4-phenylenedicarbonyl)bis{N~3~,N~4~-bis[(1S,2R)-2-phenylcyclopropyl]pyrrolidine-3,4-dicarboxami de}(Non-covalent)
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Su, L. et al., Structural Basis of TLR2/TLR1 Activation by the Synthetic Agonist Diprovocim. J. Med. Chem. (2019)
- Release Date
- 2019-04-17
- Peptides
- Toll-like receptor 2,Variable lymphocyte receptor B: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B