SMTL ID : 6nil.1

cryoEM structure of the truncated HIV-1 Vif/CBFbeta/A3F complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-4-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.83, E.85, C.114, C.117 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.83, A:E.85, A:C.114, A:C.117 ZN.2: 4 residues within 4Å: Chain D: H.83, E.85, C.114, C.117 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.83, D:E.85, D:C.114, D:C.117 ZN.3: 4 residues within 4Å: Chain G: H.83, E.85, C.114, C.117 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:H.83, G:E.85, G:C.114, G:C.117 ZN.4: 4 residues within 4Å: Chain J: H.83, E.85, C.114, C.117 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:H.83, J:E.85, J:C.114, J:C.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, Y. et al., Structural basis of antagonism of human APOBEC3F by HIV-1 Vif. Nat.Struct.Mol.Biol. (2019)

Release Date

2019-12-11

Peptides

DNA dC->dU-editing enzyme APOBEC-3F: ADGJ
Core-binding factor subunit beta: BEHK
Virion infectivity factor: CFIL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

G
G

J
J

B
B

E
E

H
H

K
K

C
C

F
F

I
I

L
L

DNA dC->dU-editing enzyme APOBEC-3F

Core-binding factor subunit beta

Virion infectivity factor