SMTL ID : 6nis.1

Crystal structure of a human anti-ZIKV-DENV neutralizing antibody MZ24 isolated following ZPIV vaccination

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

hetero-1-1-mer

Ligands

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: T.86, A.87 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain A: Q.39 Chain B: P.41, G.42 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: T.58, Y.59, K.64 Chain B: N.97 Ligand excluded by PLIP CL.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain B: A.117, H.202 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain B: S.119, V.120, K.209 Ligand excluded by PLIP CL.9: 6 residues within 4Å: Chain A: K.136, S.137 Chain B: V.120, T.121, L.122, K.209 Ligand excluded by PLIP CL.10: 4 residues within 4Å: Chain B: S.68, S.71, A.72, S.73 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 6 residues within 4Å: Chain B: K.154, D.156, S.157, S.197, E.208, T.210 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.208 GOL.6: 3 residues within 4Å: Chain B: A.117, P.118, V.207 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:P.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dussupt, V. et al., Potent Zika and dengue cross-neutralizing antibodies induced by Zika vaccination in a dengue-experienced donor. Nat Med (2020)

Release Date

2019-12-25

Peptides

MZ24 antibody heavy chain: A
MZ24 antibody light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

MZ24 antibody heavy chain

MZ24 antibody light chain