SMTL ID : 6nj7.1

11-BETA DEHYDROGENASE ISOZYME 1 IN COMPLEX WITH COLLETOIC ACID

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-tetramer

Ligands

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 29 residues within 4Å: Chain A: G.38, A.39, S.40, K.41, G.42, I.43, A.62, R.63, S.64, G.88, T.89, M.90, N.116, H.117, I.118, V.139, V.165, S.166, S.167, Y.180, K.184, L.212, G.213, L.214, I.215, T.217, T.219, A.220 Ligands: 7H6.2 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:L.212 Hydrogen bonds: A:G.38, A:S.40, A:S.40, A:K.41, A:I.43, A:R.63, A:S.64, A:T.89, A:M.90, A:N.116, A:I.118, A:K.184, A:I.215, A:T.217, A:T.217, A:T.219 Salt bridges: A:K.41, A:R.63 NAP.3: 30 residues within 4Å: Chain B: G.38, A.39, S.40, K.41, G.42, I.43, A.62, R.63, S.64, G.88, T.89, M.90, N.116, H.117, I.118, N.120, Y.144, V.165, S.166, S.167, Y.180, K.184, L.212, G.213, L.214, I.215, T.217, T.219, A.220 Ligands: 7H6.4 24 PLIP interactions: 24 interactions with chain B Hydrophobic interactions: B:L.212 Hydrogen bonds: B:G.38, B:S.40, B:S.40, B:K.41, B:I.43, B:R.63, B:S.64, B:T.89, B:T.89, B:M.90, B:N.116, B:I.118, B:Y.144, B:Y.180, B:K.184, B:I.215, B:I.215, B:T.217, B:T.217, B:T.219 Water bridges: B:T.119, B:N.120 Salt bridges: B:R.63 NAP.5: 31 residues within 4Å: Chain C: G.38, A.39, S.40, K.41, G.42, I.43, A.62, R.63, S.64, G.88, T.89, M.90, E.91, N.116, H.117, I.118, T.119, Y.144, V.165, S.166, S.167, Y.180, K.184, L.212, G.213, L.214, I.215, T.217, T.219, A.220 Ligands: 7H6.6 22 PLIP interactions: 22 interactions with chain C Hydrophobic interactions: C:L.212 Hydrogen bonds: C:G.38, C:S.40, C:S.40, C:K.41, C:I.43, C:R.63, C:S.64, C:T.89, C:T.89, C:M.90, C:N.116, C:I.118, C:Y.144, C:Y.180, C:K.184, C:I.215, C:I.215, C:T.217, C:T.217, C:T.219 Salt bridges: C:R.63 NAP.7: 28 residues within 4Å: Chain D: G.38, A.39, S.40, K.41, G.42, I.43, A.62, R.63, G.88, T.89, M.90, N.116, H.117, I.118, Y.144, V.165, S.166, S.167, Y.180, K.184, L.212, G.213, L.214, I.215, T.217, T.219, A.220 Ligands: 7H6.8 19 PLIP interactions: 19 interactions with chain D Hydrophobic interactions: D:L.212 Hydrogen bonds: D:G.38, D:S.40, D:S.40, D:K.41, D:I.43, D:R.63, D:T.89, D:M.90, D:N.116, D:I.118, D:Y.144, D:K.184, D:I.215, D:T.217, D:T.217, D:T.219, D:T.219 Salt bridges: D:R.63

4 x 7H6: (1S,4S,5S,9S)-9-hydroxy-8-methyl-4-(propan-2-yl)spiro[4.5]dec-7-ene-1-carboxylic acid(Non-covalent)

7H6.2: 7 residues within 4Å: Chain A: L.123, S.167, V.177, Y.180, G.213, L.214 Ligands: NAP.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.177, A:L.214 Hydrogen bonds: A:S.167, A:Y.180 7H6.4: 6 residues within 4Å: Chain B: T.121, S.167, V.177, Y.180, L.214 Ligands: NAP.3 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:T.121, B:V.177, B:L.214 Hydrogen bonds: B:S.167 7H6.6: 8 residues within 4Å: Chain C: T.121, L.123, S.167, V.177, Y.180, L.214, A.220 Ligands: NAP.5 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:T.121, C:V.177, C:L.214, C:A.220 Hydrogen bonds: C:S.167 7H6.8: 7 residues within 4Å: Chain D: T.121, S.167, V.177, Y.180, L.214, A.220 Ligands: NAP.7 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:T.121, D:V.177, D:L.214, D:A.220 Hydrogen bonds: D:S.167, D:Y.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ling, T. et al., Mechanistic Insight on the Mode of Action of Colletoic Acid. J.Med.Chem. (2019)

Release Date

2019-07-24

Peptides

Corticosteroid 11-beta-dehydrogenase isozyme 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Corticosteroid 11-beta-dehydrogenase isozyme 1