SMTL ID : 6njd.1 (1 other biounit)

Crystal structure of RavD (residues 1-200) from Legionella pneumophila (strain Corby) complexed with Met-1 linked di-ubiquitin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-1-1-mer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: A.109, D.113 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.113, H2O.1, H2O.1 MG.2: 2 residues within 4Å: Chain B: H.190, E.191 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.190, B:E.191, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wan, M. et al., A bacterial effector deubiquitinase specifically hydrolyses linear ubiquitin chains to inhibit host inflammatory signalling. Nat Microbiol (2019)

Release Date

2019-05-22

Peptides

Di-ubiquitin: A
RavD: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Di-ubiquitin

RavD

Related Entries With Identical Sequence