SMTL ID : 6nkk.1 (1 other biounit)

Structure of PhqE Reductase/Diels-Alderase from Penicillium fellutanum in complex with NADP+ and premalbrancheamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)(Covalent)

NAP.1: 30 residues within 4Å: Chain A: G.21, G.22, T.23, S.24, G.25, I.26, G.45, S.46, N.47, K.50, C.75, D.76, L.77, S.78, T.106, A.107, A.108, M.110, R.131, T.157, S.158, G.159, P.200, G.201, A.202, V.203, T.205, A.207, V.208 Ligands: PM7.2 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:P.200 Hydrogen bonds: A:G.21, A:T.23, A:S.24, A:S.24, A:S.24, A:S.24, A:I.26, A:S.46, A:N.47, A:D.76, A:D.76, A:L.77, A:S.78, A:T.106, A:A.108, A:R.131, A:V.203, A:V.203 Salt bridges: A:K.50 NAP.3: 31 residues within 4Å: Chain B: G.21, G.22, T.23, S.24, G.25, I.26, G.45, S.46, N.47, K.50, C.75, D.76, L.77, S.78, T.106, A.107, A.108, M.110, I.130, R.131, T.157, S.158, G.159, P.200, G.201, A.202, V.203, T.205, A.207, V.208 Ligands: PM7.4 26 PLIP interactions: 26 interactions with chain B Hydrophobic interactions: B:P.200 Hydrogen bonds: B:G.21, B:T.23, B:T.23, B:T.23, B:S.24, B:S.24, B:S.24, B:S.24, B:I.26, B:S.46, B:N.47, B:D.76, B:D.76, B:L.77, B:S.78, B:T.106, B:A.108, B:R.131, B:R.131, B:V.203, B:V.203, B:T.205 Water bridges: B:K.50, B:A.207 Salt bridges: B:K.50 NAP.5: 30 residues within 4Å: Chain C: G.21, G.22, T.23, S.24, G.25, I.26, G.45, S.46, N.47, C.75, D.76, L.77, S.78, T.106, A.107, A.108, M.110, I.130, R.131, T.157, S.158, G.159, H.161, P.200, G.201, A.202, V.203, T.205, A.207 Ligands: PM7.6 21 PLIP interactions: 21 interactions with chain C Hydrophobic interactions: C:P.200 Hydrogen bonds: C:G.21, C:T.23, C:S.24, C:S.24, C:S.24, C:S.24, C:I.26, C:S.46, C:S.46, C:N.47, C:D.76, C:D.76, C:L.77, C:S.78, C:T.106, C:A.108, C:R.131, C:R.131, C:V.203, C:V.203 NAP.7: 28 residues within 4Å: Chain D: G.21, G.22, T.23, S.24, G.25, I.26, G.45, S.46, N.47, C.75, D.76, L.77, S.78, T.106, A.107, A.108, M.110, I.130, T.157, S.158, P.200, G.201, A.202, V.203, T.205, A.207, V.208 Ligands: PM7.8 16 PLIP interactions: 16 interactions with chain D Hydrogen bonds: D:G.21, D:T.23, D:T.23, D:S.24, D:I.26, D:S.46, D:N.47, D:D.76, D:D.76, D:L.77, D:S.78, D:T.106, D:V.203, D:V.203, D:T.205, D:T.205

4 x PM7: (5aS,12aS,13aS)-12,12-dimethyl-2,3,11,12,12a,13-hexahydro-1H,5H,6H-5a,13a-(epiminomethano)indolizino[7,6-b]carbazol-14-one(Non-covalent)

PM7.2: 13 residues within 4Å: Chain A: M.110, H.161, D.166, W.169, I.172, A.202, L.204, V.208, I.211, L.212, A.219, A.223 Ligands: NAP.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.169, A:W.169, A:W.169, A:I.172, A:A.202, A:L.204, A:V.208, A:V.208, A:I.211, A:L.212, A:A.219, A:A.223 Salt bridges: A:D.166 PM7.4: 13 residues within 4Å: Chain B: M.110, H.161, D.166, W.169, I.172, A.202, L.204, V.208, I.211, L.212, A.219, A.223 Ligands: NAP.3 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:W.169, B:W.169, B:W.169, B:I.172, B:A.202, B:L.204, B:V.208, B:V.208, B:I.211, B:L.212, B:A.219, B:A.223 Salt bridges: B:D.166 PM7.6: 12 residues within 4Å: Chain C: H.161, D.166, W.169, I.172, A.202, V.203, L.204, V.208, I.211, L.212, A.223 Ligands: NAP.5 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:W.169, C:I.172, C:A.202, C:L.204, C:V.208, C:V.208, C:I.211, C:L.212, C:A.223 Salt bridges: C:D.166 PM7.8: 12 residues within 4Å: Chain D: M.110, H.161, D.166, W.169, I.172, A.202, L.204, V.208, L.212, A.219, A.223 Ligands: NAP.7 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:W.169, D:W.169, D:W.169, D:I.172, D:A.202, D:L.204, D:V.208, D:V.208, D:L.212, D:A.219, D:A.223 Salt bridges: D:D.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dan, Q. et al., Fungal indole alkaloid biogenesis through evolution of a bifunctional reductase/Diels-Alderase. Nat.Chem. (2019)

Release Date

2019-10-09

Peptides

Short chain dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Short chain dehydrogenase

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