SMTL ID : 6nle.1

X-ray structure of LeuT with V269 deletion

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.62 Å

Oligo State

monomer

Ligands

1 x LEU: LEUCINE(Non-covalent)

LEU.1: 14 residues within 4Å: Chain A: N.18, A.19, G.21, L.22, G.23, N.24, Y.105, F.250, T.251, S.253, F.256, S.351, I.355 Ligands: NA.3 8 PLIP interactions: 8 interactions with chain A, Hydrophobic interactions: A:F.250, A:F.256 Hydrogen bonds: A:A.19, A:G.21, A:L.22, A:G.23, A:Y.105, A:S.351

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: G.17, V.20, A.347, T.350, S.351 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.350 NA.3: 6 residues within 4Å: Chain A: A.19, N.24, T.251, N.282, E.286 Ligands: LEU.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Hydrogen bonds: A:G.21, A:N.24, A:T.251, A:N.282, L.1

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain A: W.421, R.449, Y.450 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.449 Water bridges: A:F.420, A:W.421 GOL.5: 2 residues within 4Å: Chain A: F.205, L.339 No protein-ligand interaction detected (PLIP)

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 2 residues within 4Å: Chain A: I.175, S.178 No protein-ligand interaction detected (PLIP) PEG.7: 3 residues within 4Å: Chain A: I.175, S.178, I.179 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.178 PEG.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.9: 2 residues within 4Å: Chain A: R.190, I.194 No protein-ligand interaction detected (PLIP) TRS.10: 2 residues within 4Å: Chain A: K.372, H.373 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.372, A:H.373

1 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.11: 7 residues within 4Å: Chain A: P.161, S.162, L.163, Y.166, F.384, H.387, F.391 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.166, A:F.384 Hydrogen bonds: A:P.161

2 x OCT: N-OCTANE(Non-covalent)

OCT.12: 3 residues within 4Å: Chain A: I.158, L.392 Ligands: OCT.13 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.158, A:L.392 OCT.13: 2 residues within 4Å: Chain A: F.391 Ligands: OCT.12 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.391

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Campbell, N.G. et al., Structural, functional, and behavioral insights of dopamine dysfunction revealed by a deletion inSLC6A3. Proc.Natl.Acad.Sci.USA (2019)

Release Date

2020-01-15

Peptides

Na(+):neurotransmitter symporter (Snf family): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Na(+):neurotransmitter symporter (Snf family)