SMTL ID : 6nm7.1

PD-L1 IgV domain bound to fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.43 Å

Oligo State

homo-dimer

Ligands

1 x 22L: 5-phenylthieno[2,3-d]pyrimidin-4(3H)-one(Non-covalent)

22L.1: 13 residues within 4Å: Chain A: I.38, Y.40, M.99, I.100, S.101, A.105, D.106 Chain B: Y.40, M.99, I.100, A.105, D.106, Y.107 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:M.99, B:A.105, A:M.99, A:A.105 Water bridges: B:D.106, B:D.106 pi-Stacking: B:Y.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Perry, E. et al., Fragment-based screening of programmed death ligand 1 (PD-L1). Bioorg. Med. Chem. Lett. (2019)

Release Date

2019-02-20

Peptides

Programmed cell death 1 ligand 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Programmed cell death 1 ligand 1

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