SMTL ID : 6nm8.1

IgV-V76T BMS compound 105

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

homo-dimer

Ligands

1 x KSD: N-({2,6-dimethoxy-4-[(2-methyl[1,1'-biphenyl]-3-yl)methoxy]phenyl}methyl)-D-alanine(Non-covalent)

KSD.1: 20 residues within 4Å: Chain A: I.38, Y.40, Q.50, V.52, M.99, I.100, S.101, A.105, D.106 Chain B: A.2, F.3, T.4, I.38, Y.40, M.99, I.100, S.101, A.105, D.106, Y.107 8 PLIP interactions: 4 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:I.38, A:Y.40, A:M.99, A:A.105, B:I.38, B:A.105 Hydrogen bonds: B:D.106 pi-Stacking: B:Y.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Perry, E. et al., Fragment-based screening of programmed death ligand 1 (PD-L1). Bioorg. Med. Chem. Lett. (2019)

Release Date

2019-02-20

Peptides

Programmed cell death 1 ligand 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Programmed cell death 1 ligand 1

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