SMTL ID : 6nmq.1

Hypoxia-Inducible Factor (HIF) Prolyl Hydroxylase 2 (PHD2) in Complex with the Carboxamide Analog JNJ43058171

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

1 x FE2: FE (II) ION(Non-covalent)

FE2.1: 4 residues within 4Å: Chain A: H.134, D.136, H.195 Ligands: KU1.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.134, A:D.136, A:H.195, H2O.2

1 x KU1: N-(4-oxo-1,4-dihydrocinnoline-3-carbonyl)glycine(Non-covalent)

KU1.2: 14 residues within 4Å: Chain A: D.75, I.77, M.120, Y.124, Y.131, H.134, D.136, I.148, Y.150, L.164, H.195, V.197, R.204 Ligands: FE2.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.77 Water bridges: A:Y.131, A:Y.131 Salt bridges: A:R.204 pi-Stacking: A:Y.131, A:Y.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bembenek, S.D. et al., Beyond Traditional Structure-Based Drug Design: The Role of Iron Complexation, Strain, and Water in the Binding of Inhibitors for Hypoxia-Inducible Factor Prolyl Hydroxylase 2. Acs Omega (2019)

Release Date

2019-04-24

Peptides

Egl nine homolog 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Egl nine homolog 1