SMTL ID : 6nn8.1 (1 other biounit)

The structure of human liver pyruvate kinase, hLPYK-S531E

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.42 Å

Oligo State

homo-tetramer

Ligands

24 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 9 residues within 4Å: Chain A: R.55, S.56, T.57, S.58, N.82, H.476, V.481, F.482, P.483 Ligand excluded by PLIP EDO.2: 4 residues within 4Å: Chain A: H.93, R.239, F.243, H.247 Ligand excluded by PLIP EDO.3: 4 residues within 4Å: Chain A: R.68, S.69, V.70, N.102 Ligand excluded by PLIP EDO.4: 7 residues within 4Å: Chain A: I.77, V.107, F.110, S.116, Y.117, R.118, V.120 Ligand excluded by PLIP EDO.5: 8 residues within 4Å: Chain A: R.85, N.87, K.282, E.284, A.305, G.307, D.308, T.340 Ligand excluded by PLIP EDO.6: 10 residues within 4Å: Chain A: K.278, D.300, P.335, T.446, G.447, Q.451, Q.474, V.475, L.477, C.478 Ligand excluded by PLIP EDO.7: 8 residues within 4Å: Chain A: V.245, G.248, V.249, D.250, E.273, G.274, I.277, Q.470 Ligand excluded by PLIP EDO.8: 11 residues within 4Å: Chain A: N.330, G.333, K.334, P.335, D.369, Q.451, S.454, R.455, R.457, C.478, R.479 Ligand excluded by PLIP EDO.9: 7 residues within 4Å: Chain A: L.520, V.539, L.540, S.541 Chain C: P.420, W.527, N.535 Ligand excluded by PLIP EDO.10: 6 residues within 4Å: Chain A: P.65, A.66, S.67, R.68, S.69, R.72 Ligand excluded by PLIP EDO.11: 10 residues within 4Å: Chain B: K.278, D.300, P.335, T.446, G.447, Q.451, Q.474, V.475, L.477, C.478 Ligand excluded by PLIP EDO.12: 11 residues within 4Å: Chain B: F.24, Q.28, V.52, A.53, C.436, A.437, A.438, R.459, A.460, R.516, D.519 Ligand excluded by PLIP EDO.13: 10 residues within 4Å: Chain B: R.85, N.87, K.282, E.284, A.305, R.306, G.307, D.308, L.309, T.340 Ligand excluded by PLIP EDO.14: 9 residues within 4Å: Chain B: Q.28, P.51, V.52, A.53, A.54, R.395, E.398, A.399, R.459 Ligand excluded by PLIP EDO.15: 8 residues within 4Å: Chain B: L.443, T.444, T.445, V.465, T.466, R.467, S.468, R.501 Ligand excluded by PLIP EDO.16: 9 residues within 4Å: Chain A: L.45, D.46, I.47 Chain B: V.289, K.290, F.292, D.293, M.324, R.328 Ligand excluded by PLIP EDO.17: 6 residues within 4Å: Chain B: E.130, I.131, R.132, G.220, V.221, D.308 Ligand excluded by PLIP EDO.18: 8 residues within 4Å: Chain C: R.85, N.87, K.282, E.284, A.305, G.307, D.308, T.340 Ligand excluded by PLIP EDO.19: 8 residues within 4Å: Chain A: P.420, W.527, Y.533, N.535 Chain C: L.520, V.539, L.540, S.541 Ligand excluded by PLIP EDO.20: 10 residues within 4Å: Chain C: F.24, Q.28, A.53, A.54, C.436, A.437, A.438, R.459, A.460, A.461 Ligand excluded by PLIP EDO.21: 9 residues within 4Å: Chain C: W.494, A.495, V.498, D.499, T.525, G.526, W.527, I.536, R.538 Ligand excluded by PLIP EDO.22: 8 residues within 4Å: Chain D: R.85, K.282, E.284, A.305, R.306, G.307, D.308, T.340 Ligand excluded by PLIP EDO.23: 11 residues within 4Å: Chain D: N.330, G.333, K.334, P.335, D.369, Q.451, S.454, R.455, R.457, C.478, R.479 Ligand excluded by PLIP EDO.24: 5 residues within 4Å: Chain D: P.31, M.34, A.35, E.40, L.44 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McFarlane, J.S. et al., Changes in the allosteric site of human liver pyruvate kinase upon activator binding include the breakage of an intersubunit cation-pi bond. Acta Crystallogr.,Sect.F (2019)

Release Date

2019-06-19

Peptides

Pyruvate kinase PKLR: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
H

Pyruvate kinase PKLR

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