SMTL ID : 6no9.1

PIM1 in complex with Cpd16 (5-amino-N-(5-((4R,5R)-4-amino-5-fluoroazepan-1-yl)-1-methyl-1H-pyrazol-4-yl)-2-(2,6-difluorophenyl)thiazole-4-carboxamide)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: F.98, I.101, T.102, D.138, D.202, G.206, D.207 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.98, A:T.102, A:T.102, A:D.138 Water bridges: A:D.138

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 2 residues within 4Å: Chain A: R.226, S.229 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.229, A:S.229 Salt bridges: A:R.226 PO4.3: 3 residues within 4Å: Chain A: E.109, E.110, R.113 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.110 Water bridges: A:R.113 Salt bridges: A:R.113

1 x KUV: 5-amino-N-{5-[(4R,5R)-4-amino-5-fluoroazepan-1-yl]-1-methyl-1H-pyrazol-4-yl}-2-(2,6-difluorophenyl)-1,3-thiazole-4-carboxamide(Non-covalent)

KUV.4: 17 residues within 4Å: Chain A: L.12, G.13, F.17, V.20, A.33, K.35, I.72, L.88, E.89, R.90, V.94, D.96, E.139, N.140, L.142, I.153, D.154 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.12, A:L.12, A:V.94 Hydrogen bonds: A:E.89, A:E.139 Water bridges: A:D.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, X. et al., Optimization of Pan-Pim Kinase Activity and Oral Bioavailability Leading to Diaminopyrazole (GDC-0339) for the Treatment of Multiple Myeloma. J. Med. Chem. (2019)

Release Date

2019-02-27

Peptides

Serine/threonine-protein kinase pim-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase pim-1

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