SMTL ID : 6nob.1 (1 other biounit)

Structure of Glycoside Hydrolase family 32 from Bifidobacterium adolescentis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

monomer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: M.276, G.277 1 PLIP interactions: 1 interactions with chain A Water bridges: A:P.283 EDO.2: 4 residues within 4Å: Chain A: E.236, Y.237, L.257, R.258 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.258, A:R.258 Water bridges: A:E.236 EDO.3: 3 residues within 4Å: Chain A: W.155, V.191, E.226 No protein-ligand interaction detected (PLIP) EDO.4: 7 residues within 4Å: Chain A: F.76, F.146, G.161, H.162, L.174, P.175, V.176 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.162, A:H.162

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 4 residues within 4Å: Chain A: E.279, L.281, D.282, N.414 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.414 PEG.6: 11 residues within 4Å: Chain A: N.130, D.131, Q.147, W.155, M.158, F.195, S.196, R.268, D.269, E.375, C.376 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.130, A:W.155, A:D.269 PEG.7: 3 residues within 4Å: Chain A: P.542, D.544, G.545 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mera, A. et al., Structure of GH32 from Bifidobacterium adolescentis. To Be Published

Release Date

2020-01-22

Peptides

Beta-fructofuranosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-fructofuranosidase

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