SMTL ID : 6nof.1

Crystal structure of FBF-2 repeat 5 mutant (C363A, R364Y, Q367S) in complex with 8-nt RNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x U- G- U- A- A- A- U- A: RNA (5'-R(*UP*GP*UP*AP*AP*AP*UP*A)-3')(Non-covalent)

U-G-U-A-A-A-U-A.1: 38 residues within 4Å: Chain A: K.39, E.46, F.80, N.82, Y.83, Q.86, K.122, F.123, C.125, R.126, Q.129, Q.160, N.161, N.163, H.164, Q.167, K.198, Y.199, Y.202, E.250, Y.251, N.253, Y.254, Q.257, K.288, F.289, S.291, H.292, E.295, Q.335, F.336, N.338, Y.339, S.391, S.392, K.395 Ligands: EDO.2, EDO.4 Protein-ligand interaction information (PLIP) not available

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: F.333, H.334, Q.335, N.338, F.390, S.392 Ligands: U-G-U-A-A-A-U-A.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.392, A:S.392 Water bridges: A:S.392 EDO.3: 3 residues within 4Å: Chain A: D.329, R.379, E.383 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.329 Water bridges: A:E.383 EDO.4: 4 residues within 4Å: Chain A: H.164, Q.167 Ligands: U-G-U-A-A-A-U-A.1, U-G-U-A-A-A-U-A.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.164 EDO.5: 5 residues within 4Å: Chain A: S.55, K.58, F.59, T.95, D.97 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.103 EDO.6: 3 residues within 4Å: Chain A: L.53, K.58, T.95 No protein-ligand interaction detected (PLIP) EDO.7: 2 residues within 4Å: Chain A: D.136, L.137 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.137 EDO.8: 8 residues within 4Å: Chain A: Y.317, I.318, P.319, H.320, K.325, D.326, A.327, I.330 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.317, A:H.320 EDO.9: 3 residues within 4Å: Chain A: T.237, T.240, C.271 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bhat, V.D. et al., Engineering a conserved RNA regulatory protein repurposes its biological function in vivo . Elife (2019)

Release Date

2019-01-30

Peptides

Fem-3 mRNA-binding factor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fem-3 mRNA-binding factor 2