SMTL ID : 6nop.1

Structure of Cyanothece McdA(D38A)-ATP complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 23 residues within 4Å: Chain A: S.30, G.31, G.32, Q.33, G.34, K.35, T.36, T.37, Q.60, P.146, F.202, R.203, I.235, L.236, E.237, S.238, Y.241, K.242 Chain B: G.31, E.167, K.171, R.203 Ligands: MG.2 27 PLIP interactions: 18 interactions with chain A, 9 interactions with chain B Hydrogen bonds: A:G.32, A:Q.33, A:G.34, A:K.35, A:T.36, A:T.36, A:T.37, A:T.37, A:Q.60, A:L.236, A:S.238, B:G.31, B:E.167, B:R.203, B:R.203 Water bridges: A:T.36, A:Q.60, A:S.144, A:R.203, B:K.171, B:K.171 Salt bridges: A:K.35, A:K.35, B:K.171, B:K.171, B:K.171 pi-Stacking: A:F.202 ATP.3: 23 residues within 4Å: Chain A: G.31, E.167, K.171, R.203 Chain B: S.30, G.31, G.32, Q.33, G.34, K.35, T.36, T.37, Q.60, P.146, F.202, R.203, I.235, L.236, E.237, S.238, Y.241, K.242 Ligands: MG.4 30 PLIP interactions: 21 interactions with chain B, 9 interactions with chain A Hydrogen bonds: B:G.32, B:Q.33, B:G.34, B:K.35, B:T.36, B:T.37, B:T.37, B:Q.60, B:L.236, B:S.238, A:G.31, A:E.167, A:R.203, A:R.203 Water bridges: B:T.36, B:T.36, B:T.36, B:T.36, B:R.203, B:Y.241, B:Y.241, B:K.242, A:S.169, A:K.171 Salt bridges: B:K.35, B:K.35, A:K.171, A:K.171, A:K.171 pi-Stacking: B:F.202

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.36 Ligands: ATP.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.36, H2O.1, H2O.1, H2O.4 MG.4: 2 residues within 4Å: Chain B: T.36 Ligands: ATP.3 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:T.36, H2O.7, H2O.7, H2O.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schumacher, M.A. et al., Structures of maintenance of carboxysome distribution Walker-box McdA and McdB adaptor homologs. Nucleic Acids Res. (2019)

Release Date

2019-04-24

Peptides

Cobyrinic acid ac-diamide synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Cobyrinic acid ac-diamide synthase