SMTL ID : 6nos.1

PD-L1 IgV domain V76T with fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

1 x KWA: 1-[5-(3,5-dichlorophenyl)furan-2-yl]-N-methylmethanamine(Non-covalent)

KWA.1: 14 residues within 4Å: Chain A: I.37, Y.39, M.98, I.99, S.100, A.104, D.105, Y.106 Chain B: Y.39, Q.49, M.98, A.104, D.105, Y.106 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:A.104, B:Y.39, B:M.98 Hydrogen bonds: A:A.104 pi-Stacking: A:Y.39 Halogen bonds: A:I.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Perry, E. et al., Fragment-based screening of programmed death ligand 1 (PD-L1). Bioorg. Med. Chem. Lett. (2019)

Release Date

2019-02-20

Peptides

Programmed cell death 1 ligand 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Programmed cell death 1 ligand 1

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