SMTL ID : 6noz.1

X-ray structure of PEDV papain-like protease 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.125, C.126, C.151, H.153 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.125, A:C.126, A:C.151, A:H.153

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: R.59, F.60, K.61, S.62, A.63 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.59, A:R.59, A:F.60, A:S.62 GOL.3: 4 residues within 4Å: Chain A: K.12, E.15, W.86, L.87 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.15, A:L.87 Water bridges: A:G.89 GOL.4: 6 residues within 4Å: Chain A: T.22, G.23, A.25, F.26, D.41, K.92 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.41, A:K.92 Water bridges: A:T.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Clasman, J.C. et al., Evaluating ubiquitin specificity of papain-likeprotease 2 from alphacoronaviruses FIPV and PEDV using structure-guided engineering. To Be Published

Release Date

2020-01-22

Peptides

Polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Polyprotein