SMTL ID : 6np5.1

AAC-VIa bound to Kanamycin B

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

1 x 9CS: (1R,2S,3S,4R,6S)-4,6-DIAMINO-3-[(3-AMINO-3-DEOXY-ALPHA-D-GLUCOPYRANOSYL)OXY]-2-HYDROXYCYCLOHEXYL 2,6-DIAMINO-2,6-DIDEOXY-ALPHA-D-GLUCOPYRANOSIDE(Non-covalent)

9CS.1: 15 residues within 4Å: Chain A: F.59, S.65, Y.67, E.68, F.98, D.118, Y.141, D.165, H.171, S.207, N.208, A.216, P.217, G.219, D.221 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:D.118, A:D.118, A:Y.141, A:D.165, A:S.207, A:S.207, A:N.208, A:N.208, A:N.208, A:D.221 Water bridges: A:D.118, A:N.208

2 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.2: 3 residues within 4Å: Chain A: T.53, N.55, D.127 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.127, H2O.1, H2O.5, H2O.11, H2O.16 MG.3: 1 residues within 4Å: Chain A: T.107 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, P. et al., Low-Barrier and Canonical Hydrogen Bonds Modulate Activity and Specificity of a Catalytic Triad. Angew.Chem.Int.Ed.Engl. (2019)

Release Date

2019-09-25

Peptides

Aminoglycoside N(3)-acetyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aminoglycoside N(3)-acetyltransferase

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