SMTL ID : 6np9.1

PD-L1 IgV domain V76T with fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.27 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.69, L.70, L.71, K.72 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.70, A:K.72 Water bridges: A:K.72 Salt bridges: A:R.69, A:K.72 SO4.2: 3 residues within 4Å: Chain A: R.96, Y.106, R.108 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.106 Water bridges: A:R.96 Salt bridges: A:R.96, A:R.108 SO4.3: 4 residues within 4Å: Chain B: R.69, L.70, L.71, K.72 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:L.70, B:K.72 Water bridges: B:K.72 Salt bridges: B:R.69, B:K.72 SO4.4: 3 residues within 4Å: Chain B: R.96, Y.106, R.108 3 PLIP interactions: 3 interactions with chain B Water bridges: B:R.96 Salt bridges: B:R.96, B:R.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Perry, E. et al., Fragment-based screening of programmed death ligand 1 (PD-L1). Bioorg. Med. Chem. Lett. (2019)

Release Date

2019-02-20

Peptides

Programmed cell death 1 ligand 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Programmed cell death 1 ligand 1

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